Single Cell Isolation and Sorting

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1.  Z. Környei et al.: Cell sorting in a Petri dish controlled by computer vision Nature Scientific Reports 3, Article number: 1088 (2013) Open access paper.

2. R. Salánki et al.: Automated single cell sorting and deposition in submicroliter drops, Appl. Phys. Lett. 105, 083703 (2014)

3. R. Salánki et al.: High-throughput image based single cell isolation, Microscopy and Analysis, January issue, S10-13 (2015) Open access paper

4. R. Ungai-Salánki et al.: Automated single cell isolation from suspension with computer vision, Scientific Reports 6, Article number: 20375 (2016) Open access paper

5. B. Francz et al.: Subnanoliter precision piezo pipette for single cell isolation and droplet printing, Microfluidcs and Nanofluidics 24: 12 (2020)
6. Q. Verron et al.: Isolation of individual natural killer cells from deep, high-aspect ratio microwell arrays - an evaluative study, bioRxiv doi: https://doi.org/10.1101/2025.02.20.639369 (2025)

    

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Single Cell RNA Sequencing

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1. Mia Palmkvist: Malaria and polypeptides of plasmodium falciparum at the infected erythrocyte surface, PhD Thesis, Karolinska Institutet, Stockholm (2016)

2. A. Kozlov et al.: A screening of UNF targets identifies Rnb, a novel regulator of Drosophila circadian rhythms, The Journal of Neuroscience  7, 3286-16 (2017)

3. M. Ngara et al.: Exploring parasite heterogeneity using single-cell RNA-seq reveals a gene signature among sexual stage Plasmodium falciparum parasites, Experimental Cell Research (2018)

4. Payam Haftbaradaran Esfahani et al.: Cell shape determines gene expression: cardiomyocyte morphotypic transcriptomes, Basic Research in Cardiology 115(7) (2020)

5. Payam Haftbaradaran Esfahani, Ralph Knöll: An Approach to Study Shape-Dependent Transcriptomics at a Single Cell Level, jove doi: 10.3791/61577 (2020).

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Rare cell isolation

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1. Marnie Winter et al.: Isolation of Circulating Fetal Trophoblasts Using Inertial Microfluidics for Noninvasive Prenatal Testing, Advanced Materials Technologies 1800066 (2018)

2. Meysam Rezaei et al.: Simple-to-Operate Approach for Single Cell Analysis Using a
   Hydrophobic Surface and Nanosized Droplets, Anal. Chem. 93, 4584−4592 (2021)

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Protein Engineering

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1. K. Piatkevich et al. : A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters, Nature Chem Biol, doi:10.1038/s41589-018-0004-9 (2018)

2. X. Xiao et al: Genetically encoded biosensor for monitoring spatiotemporal dynamics of CCR2 ligands in culture and in vivo, Nature Methods  https://doi.org/10.1038/s41592-025-02742-y (2025)

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Single Cell Adhesion Force

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1. R. Salánki et al. : Single cell adhesion assay using computer controlled micropipette, PLoS ONE 9(10): e111450 (2014) Open access paper.​

2. T. Gerecsei et al.: Adhesion force measurements on functionalized microbeads: An in-depth comparison of computer controlled micropipette and fluidic force microscopy, Journal of Colloid and Interface Science, 555, 245-53 (2019)

3. T. Gerecsei et al.: Dissociation Constant of Integrin-RGD Binding in Live Cells from Automated Micropipette and Label-Free Optical Data, Biosensors 2021, 11, 32 (2021)

4. R. Ungai-Salánki et al.:  Nanonewton scale adhesion force measurements on biotinylated microbeads with a robotic micropipette, J. Colloid and Interface Science 602, 291-99 (2021)

5. R. Ungai-Salánki et al.: Single-cell adhesion strength and contact density drops in the M phase of cancer cells, Scientific Reports 11, Article number: 18500 (2021)

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Immunology​

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1. P. K. Jani et al.: Complement MASP-1 enhances adhesion between endothelial cells and neutrophils by up-regulating E-selectin expression, Molecular Immunology 75, 38–47 (2016)

2. N. Orgován et al.: Adhesion kinetics of human primary monocytes, dendritic cells, and macrophages: Dynamic cell adhesion measurements with a label-free optical biosensor and their comparison with end-point assays, Biointerphases 11, 031001 (2016)

3. N. Sándor et al.: CD11c/CD18 Dominates Adhesion of Human Monocytes, Macrophages and Dendritic Cells over CD11b/CD18, PLoS ONE 11(9), e0163120 (2016) Open access paper.

4. B. Szilvia Lukácsi et al.: The differential role of CR3 (CD11b/CD18) and CR4 (CD11c/CD18) in the adherence, migration and podosome formation of human macrophages and dendritic cells under inflammatory conditions, PLoS ONE 15(5): e0232432 (2020) Open access paper.

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